Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs74966104 chr11:54867854 A/G 8.44E-8 481 31.33 27.97 21.18 KM Plot
PRAD rs75021179 chr11:129965997 C/T 7.9E-7 493 30.87 32.22 29.17 KM Plot
PRAD rs7503139 chr17:79641534 C/T 4.42E-5 488 30.48 31.37 25.67 KM Plot
PRAD rs7503637 chr17:79649515 G/A 3.55E-5 490 29.63 32.43 25.67 KM Plot
PRAD rs75052855 chr9:72829804 C/T 1.74E-5 494 30.8 31.35 22.45 KM Plot
PRAD rs75054689 chr11:1377474 T/C 1.43E-6 487 31.28 26.13 61.83 KM Plot
PRAD rs75106180 chr12:52855351 G/A 0.000153 490 29.32 36.48 22.93 KM Plot
PRAD rs75112597 chr16:58032749 C/T 2.04E-5 488 30.8 31.8 44.3 KM Plot
PRAD rs75123260 chr5:154276011 C/A 0 493 29.97 35.57 4.87 KM Plot
PRAD rs75124586 chr1:1157564 G/A 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs7514505 chr1:6719976 C/T 0.000128 493 29.97 31.13 30.73 KM Plot
PRAD rs75146653 chr11:1371786 C/T 1.45E-6 485 31.28 26.13 61.83 KM Plot
PRAD rs75146657 chr5:154168192 T/C 0 490 29.63 36.05 4.87 KM Plot
PRAD rs7514754 chr1:31722413 G/T 2.34E-6 493 22.83 31.25 31.2 KM Plot
PRAD rs75165450 chr1:1160226 A/G 2.58E-10 487 31.27 30.73 13.73 KM Plot